Explore projects

ibrowser

First excercise

FLiTrak3D (or FLIT for “FLight Insect Tracker”) is a Python package that prepare video recordings to be used by DeepLabCut (simple 2D/3D tracking, cropping and stitching). Then use DeepLabCut to estimate the 2D coordinates of various bodyparts of a flying insect and fit a 3D skeleton to these 2D coordinates

Code for fitting mixed distributions beyond Gaussian mixtures. It also has new distributions classes based on survival analysis.

Spark standalone clusters on SLURM

Pipeline to rank multiple putative BGC assemblies as those generated by biosyntheticSpades when there are multiple possible paths in the assembly graph. Code is derived by an early version of BiG-SCAPE [https://git.wur.nl/medema-group/BiG-SCAPE]

Transcriptomics study on OrV infection in C. elegans