Explore projects

A multiple protein structure alignment and feature extraction suite

Script eQTL analysis Tomo eQTL paper

FLiTrak3D (or FLIT for “FLight Insect Tracker”) is a Python package that prepare video recordings to be used by DeepLabCut (simple 2D/3D tracking, cropping and stitching). Then use DeepLabCut to estimate the 2D coordinates of various bodyparts of a flying insect and fit a 3D skeleton to these 2D coordinates

Pipeline to rank multiple putative BGC assemblies as those generated by biosyntheticSpades when there are multiple possible paths in the assembly graph. Code is derived by an early version of BiG-SCAPE [https://git.wur.nl/medema-group/BiG-SCAPE]

Transcriptomics study on OrV infection in C. elegans

Last part of the GenTORE work on comparing resilience-related features of cows from different breeds and crossbreds.

Example for fpm and Fortran Standard Library