Explore projects

ACT project for the masters programme Geo-Information Science at Wageningen University & Research, conducted for the Dutch Ministry of Defence

PanTools, WUR Bioinformatics

ACT project for the masters programme Geo-Information Science at Wageningen University & Research, conducted for the Dutch Ministry of Defence

PanTools, WUR Bioinformatics

Snakemake pipeline to do QC on short reads and k-mer based genome estimation for genome size, heterozygosity, ploidy and repeat content on both short reads and PacBio HiFi data.

The script focuses on assessing tree vitality trends in urban areas of the Netherlands using high-resolution satellite data and vegetation indices. It employs tree segmentation, trend analysis with weighted linear regression, and classification based on slope values. The methodology enables scalable monitoring of tree health and stress, providing valuable insights for urban forestry management and planning.

Data and code for the summerschool Image Processing for Plant Phenotyping