Explore projects

Code and Data repository for manuscript "A metadata managed FAIR end-to-end workflow for microbial community Omics data analysis"

Tool for combining two or more categorical geospatial rasters.

FLiTrak3D (or FLIT for “FLight Insect Tracker”) is a Python package that prepare video recordings to be used by DeepLabCut (simple 2D/3D tracking, cropping and stitching). Then use DeepLabCut to estimate the 2D coordinates of various bodyparts of a flying insect and fit a 3D skeleton to these 2D coordinates

An automated pipeline to generate CADD scores.

Bacterial genome mining tool for gene clusters related to rhizosphere competence. Web server available at https://rhizosmash.bioinformatics.nl

FLiTrak3D (or FLIT for “FLight Insect Tracker”) is a Python package that prepare video recordings to be used by DeepLabCut (simple 2D/3D tracking, cropping and stitching). Then use DeepLabCut to estimate the 2D coordinates of various bodyparts of a flying insect and fit a 3D skeleton to these 2D coordinates

TrakCoreLib is a Python library that provide core modules for image processing, camera model and calibration, 2d and 3d tracking, etc..

This repository is the RNA sequence counts/TPMs/FPKMs pipeline.