Explore projects
-
-
-
-
-
Calculate the diversity of your gene clusters! Using hmmscan to find the pfam domains. Jaccard, DDS, GK as distance metrics including sequence similarity as a modifier. It outputs tab delimited network files that can be visualized in Cytoscape.
Updated -
A script for retrieval of SMILES chemical data of compounds produced by Biosynthetic Gene Clusters. Data is gathered from the MIBiG repository (single package with all entries in JSON format)
Updated -
-
Scripts and resources used for my MSc Thesis at the Bioinformatics chair group.
The goal this project is to create a pipeline that automates the secondary metabolite phylogenetic analysis of fungi to a certain extent.
Updated -
Updated
-
Repository for Python raster GIS library with low memory requirements
Updated -
Updated
-
Updated
-
Updated
-
Updated
-
Updated