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MSc Thesis: Investigating Plant-nematode interaction using spatial transcriptomics

HPC Deployment toolbox used at WUR for Anunna

FLiTrak3D (or FLIT for “FLight Insect Tracker”) is a Python package that prepare video recordings to be used by DeepLabCut (simple 2D/3D tracking, cropping and stitching). Then use DeepLabCut to estimate the 2D coordinates of various bodyparts of a flying insect and fit a 3D skeleton to these 2D coordinates

Code for NPEC PHIS

NER-CNS Pipeline is the Nematology Expression RNA-seq Counts Normalization pipeline using Snakemake This repository is the RNA sequence counts/TPMs/FPKMs pipeline.

Multi Reclass Tool for geospatial rasters.

PanTools, WUR Bioinformatics