PanTools, WUR Bioinformatics

Biosynthetic Genes Similarity Clustering and Prospecting Engine.

Defines a distance metric between Gene Clusters using a combination of three indices (Jaccard Index of domain types, Domain Sequence Similarity the Adjacency Index)

Repository for Python raster GIS library with low memory requirements

This repository contains a couple of scripts to make living with the WUR git repo a bit easier. Feel free to add code, by forking, coding and creating a merge request.

Basic definition files for containers

ACT project for the masters programme Geo-Information Science at Wageningen University & Research, conducted for the Dutch Ministry of Defence

Public access to WoSIS standardised data (ISRIC, WDC Soils)

Contains Instructions how to set up iRODS for sysadmins and training material for different user goups.

CNN methods that estimate the diameter of the crop, even when it's occluded.

Scripts and resources used for my MSc Thesis at the Bioinformatics chair group.

The goal this project is to create a pipeline that automates the secondary metabolite phylogenetic analysis of fungi to a certain extent.

A script for retrieval of SMILES chemical data of compounds produced by Biosynthetic Gene Clusters. Data is gathered from the MIBiG repository (single package with all entries in JSON format)